Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005156.1 Corchorus olitorius cultivar O-4 contig05177, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1708
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29


Found at i:519 original size:26 final size:26

Alignment explanation


    Indices: 483--534  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        473 GGGGGTCATT

                                      
        483 GGCTATGGCACCCGATCGAGCTCTGG
          1 GGCTATGGCACCCGATCGAGCTCTGG

                                      
        509 GGCTATGGCACCCGATCGAGCTCTGG
          1 GGCTATGGCACCCGATCGAGCTCTGG

        535 CTGCTGCTAG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19


Consensus pattern (26 bp):   
GGCTATGGCACCCGATCGAGCTCTGG
Done.