Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000517.1 Corchorus olitorius cultivar O-4 contig00517, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 692

Length: 1154
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31


Found at i:383 original size:21 final size:21

Alignment explanation


    Indices: 359--398  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        349 CACCTGGGTT

                                  
        359 CTCAA-GCAAACCACGTGGGGG
          1 CTCAAGGC-AACCACGTGGGGG

                         *     
        380 CTCAAGGCAACCATGTGGG
          1 CTCAAGGCAACCACGTGGG

        399 CGCCCAGGTG


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  21   15  0.88
  22    2  0.12

ACGTcount: A:0.28, C:0.28, G:0.33, T:0.12


Consensus pattern (21 bp):   
CTCAAGGCAACCACGTGGGGG
Done.