Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000518.1 Corchorus olitorius cultivar O-4 contig00518, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4184
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37


Found at i:2276 original size:11 final size:11

Alignment explanation


    Indices: 2257--2291  Score: 52
    Period size: 11  Copynumber: 3.2  Consensus size: 11

       2247 TTTTTCTGTT

                *      
       2257 TTTTGTTTTTG
          1 TTTTATTTTTG

                     * 
       2268 TTTTATTTTCG
          1 TTTTATTTTTG

                       
       2279 TTTTATTTTTG
          1 TTTTATTTTTG

              
       2290 TT
          1 TT

       2292 GCGCTATTAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  11   21  1.00

ACGTcount: A:0.06, C:0.03, G:0.11, T:0.80


Consensus pattern (11 bp):   
TTTTATTTTTG
Done.