Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005186.1 Corchorus olitorius cultivar O-4 contig05208, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1092
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18


Found at i:382 original size:12 final size:12

Alignment explanation


    Indices: 367--392  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        357 TGCCGTCATT

                        
        367 GCCGCCGAAGCC
          1 GCCGCCGAAGCC

                        
        379 GCCGCCGAAGCC
          1 GCCGCCGAAGCC

              
        391 GC
          1 GC

        393 GCTGCCCGCC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.15, C:0.50, G:0.35, T:0.00


Consensus pattern (12 bp):   
GCCGCCGAAGCC

Found at i:391 original size:21 final size:21

Alignment explanation


    Indices: 367--465  Score: 65
    Period size: 21  Copynumber: 4.6  Consensus size: 21

        357 TGCCGTCATT

                                 
        367 GCCGCCGAAGCCGCCGCCGAA
          1 GCCGCCGAAGCCGCCGCCGAA

                   **        ** **
        388 GCCG-CGCTGCCCGCCGGGGTT
          1 GCCGCCGAAG-CCGCCGCCGAA

                     *              
        409 GCCGCCGAACCCGGCACCGCCGAA
          1 GCCGCCGAAGCC-G--CCGCCGAA

                   **            
        433 GCCGCCGCTGCCGCCGCCGAA
          1 GCCGCCGAAGCCGCCGCCGAA

               *        
        454 GCCCCCGAAGCC
          1 GCCGCCGAAGCC

        466 CATGGGATTG


Statistics
Matches: 54,  Mismatches: 19, Indels: 10
        0.65            0.23        0.12

Matches are distributed among these distances:
  20    3  0.06
  21   34  0.63
  22    3  0.06
  23    1  0.02
  24   13  0.24

ACGTcount: A:0.13, C:0.49, G:0.33, T:0.04


Consensus pattern (21 bp):   
GCCGCCGAAGCCGCCGCCGAA
Done.