Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005194.1 Corchorus olitorius cultivar O-4 contig05216, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 808

Length: 1347
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28


Found at i:994 original size:19 final size:19

Alignment explanation


    Indices: 970--1007  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        960 CGGGGGCGGC

                               
        970 ATCTAAGGATCATGTTGTT
          1 ATCTAAGGATCATGTTGTT

                               
        989 ATCTAAGGATCATGTTGTT
          1 ATCTAAGGATCATGTTGTT

       1008 GAGGATCCTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42


Consensus pattern (19 bp):   
ATCTAAGGATCATGTTGTT
Done.