Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000520.1 Corchorus olitorius cultivar O-4 contig00520, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5284
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33


Found at i:1649 original size:2 final size:2

Alignment explanation


    Indices: 1642--1666  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       1632 ACAACTACAA

                                                 
       1642 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

       1667 GCTAACATAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:5164 original size:16 final size:16

Alignment explanation


    Indices: 5143--5173  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       5133 TCAAGTTGTA

                  *         
       5143 TAGTAATCTTATTAAT
          1 TAGTAACCTTATTAAT

                           
       5159 TAGTAACCTTATTAA
          1 TAGTAACCTTATTAA

       5174 CTGAGGTTTT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45


Consensus pattern (16 bp):   
TAGTAACCTTATTAAT
Done.