Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005200.1 Corchorus olitorius cultivar O-4 contig05223, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 733

Length: 1222
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.18


Found at i:276 original size:21 final size:21

Alignment explanation


    Indices: 239--279  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        229 ATCGACTACA

                       *         
        239 AGGCCTGCATGGATGCCTGCC
          1 AGGCCTGCATGCATGCCTGCC

                                 
        260 AGGCCTGCAT-CATTGCCTGC
          1 AGGCCTGCATGCA-TGCCTGC

        280 AATACCTGTG


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    1  0.06
  21   17  0.94

ACGTcount: A:0.15, C:0.34, G:0.29, T:0.22


Consensus pattern (21 bp):   
AGGCCTGCATGCATGCCTGCC
Done.