Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005202.1 Corchorus olitorius cultivar O-4 contig05225, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 696

Length: 1161
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32


Found at i:175 original size:70 final size:70

Alignment explanation


    Indices: 57--213  Score: 287
    Period size: 70  Copynumber: 2.2  Consensus size: 70

         47 CCGCAACAAC

                                                      *          *           
         57 TCCTGGACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTGCATTTCTGCGTTCCTCAACAGC
          1 TCCTGGACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTACATTTCTGCGCTCCTCAACAGC

                 
        122 CCAAG
         66 CCAAG

                                                       *                     
        127 TCCTGGACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTATATTTCTGCGCTCCTCAACAGC
          1 TCCTGGACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTACATTTCTGCGCTCCTCAACAGC

                 
        192 CCAAG
         66 CCAAG

                             
        197 TCCTGGACAGGACTTGG
          1 TCCTGGACAGGACTTGG

        214 CCAAGATCTG


Statistics
Matches: 84,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  70   84  1.00

ACGTcount: A:0.18, C:0.32, G:0.24, T:0.27


Consensus pattern (70 bp):   
TCCTGGACAGGACTTGGGTAACTCCTGCCCAGGTCTTGTCCTACATTTCTGCGCTCCTCAACAGC
CCAAG
Done.