Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005215.1 Corchorus olitorius cultivar O-4 contig05238, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 898

Length: 1497
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34


Found at i:413 original size:14 final size:14

Alignment explanation


    Indices: 394--424  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        384 ATGGGATATA

                          
        394 TATCGTATAATTCT
          1 TATCGTATAATTCT

                          
        408 TATCGTATAATTCT
          1 TATCGTATAATTCT

               
        422 TAT
          1 TAT

        425 ATATTGTACA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52


Consensus pattern (14 bp):   
TATCGTATAATTCT
Done.