Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005221.1 Corchorus olitorius cultivar O-4 contig05244, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 704

Length: 1174
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42


Found at i:402 original size:19 final size:21

Alignment explanation


    Indices: 366--405  Score: 57
    Period size: 19  Copynumber: 2.0  Consensus size: 21

        356 TCTTTTGAGT

                         *       
        366 CTTTCTCTTCTTGTATATTTA
          1 CTTTCTCTTCTTGCATATTTA

                                 
        387 CTTTCT-TT-TTGCATATTTA
          1 CTTTCTCTTCTTGCATATTTA

        406 TTTTACCGTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  19   10  0.56
  20    2  0.11
  21    6  0.33

ACGTcount: A:0.15, C:0.17, G:0.05, T:0.62


Consensus pattern (21 bp):   
CTTTCTCTTCTTGCATATTTA
Done.