Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005224.1 Corchorus olitorius cultivar O-4 contig05247, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1076
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29


Found at i:95 original size:21 final size:21

Alignment explanation


    Indices: 71--118  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

         61 TGCTGCTGCT

                                  
         71 GCTGCTGAC-GCTGCAACTAAC
          1 GCTGCTG-CTGCTGCAACTAAC

                          *   *  
         92 GCTGCTGCTGCTGCTACTGAC
          1 GCTGCTGCTGCTGCAACTAAC

                  
        113 GCTGCT
          1 GCTGCT

        119 CAAGCTGCTT


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  20    1  0.04
  21   23  0.96

ACGTcount: A:0.15, C:0.33, G:0.27, T:0.25


Consensus pattern (21 bp):   
GCTGCTGCTGCTGCAACTAAC
Done.