Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000523.1 Corchorus olitorius cultivar O-4 contig00523, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1903
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36


Found at i:284 original size:15 final size:16

Alignment explanation


    Indices: 255--284  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        245 CCTTAATAAT

                            
        255 TCATCCATAAATTTTA
          1 TCATCCATAAATTTTA

                           
        271 TCATCCAT-AATTTT
          1 TCATCCATAAATTTT

        285 CTATATTCTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47


Consensus pattern (16 bp):   
TCATCCATAAATTTTA
Done.