Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005244.1 Corchorus olitorius cultivar O-4 contig05267, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 697

Length: 1163
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27


Found at i:248 original size:21 final size:21

Alignment explanation


    Indices: 222--263  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        212 TAGCAAGAGG

                                 
        222 GTCAATCTTTACTCACTTTGA
          1 GTCAATCTTTACTCACTTTGA

                                 
        243 GTCAATCTTTACTCACTTTGA
          1 GTCAATCTTTACTCACTTTGA

        264 AAAGTATTCC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.24, C:0.24, G:0.10, T:0.43


Consensus pattern (21 bp):   
GTCAATCTTTACTCACTTTGA

Found at i:804 original size:21 final size:21

Alignment explanation


    Indices: 778--819  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        768 GTTGAACCAA

                                 
        778 TAAAGAGCGAATTCCAGTAAC
          1 TAAAGAGCGAATTCCAGTAAC

                     *           
        799 TAAAGAGCGCATTCCAGTAAC
          1 TAAAGAGCGAATTCCAGTAAC

        820 CCGGGGTTGA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.40, C:0.21, G:0.19, T:0.19


Consensus pattern (21 bp):   
TAAAGAGCGAATTCCAGTAAC
Done.