Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005250.1 Corchorus olitorius cultivar O-4 contig05273, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 662

Length: 1104
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:420 original size:20 final size:20

Alignment explanation


    Indices: 395--432  Score: 58
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        385 TTCCCCTTTT

                       *        
        395 ACAGCTACAAAGCGAGTTTC
          1 ACAGCTACAAAACGAGTTTC

                   *          
        415 ACAGCTAGAAAACGAGTT
          1 ACAGCTACAAAACGAGTT

        433 AAGGGTAGCT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   16  1.00

ACGTcount: A:0.39, C:0.21, G:0.21, T:0.18


Consensus pattern (20 bp):   
ACAGCTACAAAACGAGTTTC

Found at i:654 original size:33 final size:33

Alignment explanation


    Indices: 617--683  Score: 134
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        607 CATCAACATC

                                             
        617 AGACAAGAGCGAGGAACTAGTTGGAGAACGTGG
          1 AGACAAGAGCGAGGAACTAGTTGGAGAACGTGG

                                             
        650 AGACAAGAGCGAGGAACTAGTTGGAGAACGTGG
          1 AGACAAGAGCGAGGAACTAGTTGGAGAACGTGG

             
        683 A
          1 A

        684 ACCTTTCTTT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   34  1.00

ACGTcount: A:0.37, C:0.12, G:0.39, T:0.12


Consensus pattern (33 bp):   
AGACAAGAGCGAGGAACTAGTTGGAGAACGTGG
Done.