Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005258.1 Corchorus olitorius cultivar O-4 contig05281, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1012
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35


Found at i:669 original size:20 final size:19

Alignment explanation


    Indices: 624--672  Score: 53
    Period size: 20  Copynumber: 2.4  Consensus size: 19

        614 TCTGTTCCGC

                            **  
        624 GAAATTAGAAAATTTATTTT
          1 GAAATTA-AAAATTTAAGTT

                                 
        644 GAAAATTAAAAATTTAAAGTT
          1 G-AAATTAAAAATTT-AAGTT

                    
        665 GAAATTAA
          1 GAAATTAA

        673 TCAATAAAAA


Statistics
Matches: 25,  Mismatches: 2, Indels: 4
        0.81            0.06        0.13

Matches are distributed among these distances:
  20   15  0.60
  21   10  0.40

ACGTcount: A:0.53, C:0.00, G:0.10, T:0.37


Consensus pattern (19 bp):   
GAAATTAAAAATTTAAGTT
Done.