Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005277.1 Corchorus olitorius cultivar O-4 contig05300, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1002
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.42

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:992 original size:12 final size:12

Alignment explanation


    Indices: 975--1002  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

        965 TTTTATTTTC

                        
        975 AATATTTTCAAT
          1 AATATTTTCAAT

                        
        987 AATATTTTCAAT
          1 AATATTTTCAAT

                
        999 AATA
          1 AATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46


Consensus pattern (12 bp):   
AATATTTTCAAT
Done.