Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005295.1 Corchorus olitorius cultivar O-4 contig05318, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 889

Length: 1483
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29


Found at i:261 original size:23 final size:23

Alignment explanation


    Indices: 216--261  Score: 58
    Period size: 24  Copynumber: 2.0  Consensus size: 23

        206 GAAGGAGCAA

                              *    
        216 TTGGAATCTGAAAATGAGTTAAT
          1 TTGGAATCTGAAAATGAGATAAT

                        *           
        239 TTGGAAATCTGATAATG-GATAAT
          1 TTGG-AATCTGAAAATGAGATAAT

        262 GATAAGGAAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  23    9  0.45
  24   11  0.55

ACGTcount: A:0.39, C:0.04, G:0.22, T:0.35


Consensus pattern (23 bp):   
TTGGAATCTGAAAATGAGATAAT
Done.