Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005297.1 Corchorus olitorius cultivar O-4 contig05320, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1131
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29


Found at i:472 original size:24 final size:24

Alignment explanation


    Indices: 442--489  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        432 GGGAGGATCA

                                    
        442 AACAATACCCGTCATGCTGATTTC
          1 AACAATACCCGTCATGCTGATTTC

                                    
        466 AACAATACCCGTCATGCTGATTTC
          1 AACAATACCCGTCATGCTGATTTC

        490 GCTGATCTAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29


Consensus pattern (24 bp):   
AACAATACCCGTCATGCTGATTTC
Done.