Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005303.1 Corchorus olitorius cultivar O-4 contig05326, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 926

Length: 1544
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33


Found at i:1090 original size:23 final size:23

Alignment explanation


    Indices: 1045--1090  Score: 58
    Period size: 22  Copynumber: 2.0  Consensus size: 23

       1035 TTAGCCTTCC

                              *    
       1045 AATTAAGGGGTAATTATCGTTTA
          1 AATTAAGGGGTAATTATCATTTA

                           *        
       1068 AATT-AGGGGTAATTTTCAATTTA
          1 AATTAAGGGGTAATTATC-ATTTA

       1091 TTAGGCTAAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  22   12  0.60
  23    8  0.40

ACGTcount: A:0.35, C:0.04, G:0.20, T:0.41


Consensus pattern (23 bp):   
AATTAAGGGGTAATTATCATTTA
Done.