Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005309.1 Corchorus olitorius cultivar O-4 contig05332, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 707

Length: 1179
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31


Found at i:842 original size:29 final size:29

Alignment explanation


    Indices: 800--856  Score: 114
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        790 ATTAAAGGTT

                                         
        800 TCAGCTAATTTCCTCTTCGCTGCTTATTA
          1 TCAGCTAATTTCCTCTTCGCTGCTTATTA

                                        
        829 TCAGCTAATTTCCTCTTCGCTGCTTATT
          1 TCAGCTAATTTCCTCTTCGCTGCTTATT

        857 CTCGGAATTG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.16, C:0.28, G:0.11, T:0.46


Consensus pattern (29 bp):   
TCAGCTAATTTCCTCTTCGCTGCTTATTA
Done.