Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005311.1 Corchorus olitorius cultivar O-4 contig05334, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 790

Length: 1317
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.23


Found at i:255 original size:14 final size:15

Alignment explanation


    Indices: 236--264  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

        226 GCTGATGAAC

                           
        236 AGCCTGG-CAGATAA
          1 AGCCTGGACAGATAA

                           
        250 AGCCTGGACAGATAA
          1 AGCCTGGACAGATAA

        265 CCTTATGATT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    7  0.50
  15    7  0.50

ACGTcount: A:0.38, C:0.21, G:0.28, T:0.14


Consensus pattern (15 bp):   
AGCCTGGACAGATAA
Done.