Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005316.1 Corchorus olitorius cultivar O-4 contig05339, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1038
ACGTcount: A:0.23, C:0.26, G:0.31, T:0.20


Found at i:1011 original size:16 final size:17

Alignment explanation


    Indices: 992--1029  Score: 53
    Period size: 16  Copynumber: 2.3  Consensus size: 17

        982 CGGAAACTTA

                              
        992 GCGGCGCCGC-AATGG-T
          1 GCGGCG-CGCTAATGGTT

                             
       1008 GCGGCGCGCTAATGGTT
          1 GCGGCGCGCTAATGGTT

                 
       1025 GCGGC
          1 GCGGC

       1030 TGAGTGCGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  15    3  0.15
  16   11  0.55
  17    6  0.30

ACGTcount: A:0.11, C:0.29, G:0.45, T:0.16


Consensus pattern (17 bp):   
GCGGCGCGCTAATGGTT
Done.