Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005317.1 Corchorus olitorius cultivar O-4 contig05340, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 667

Length: 1113
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.20


Found at i:41 original size:21 final size:22

Alignment explanation


    Indices: 8--87  Score: 87
    Period size: 21  Copynumber: 3.8  Consensus size: 22

          1 ACCTGCT

                 *  *             
          8 GCAGCGGCGGCCGGAG-CGGCA
          1 GCAGCAGCTGCCGGAGCCGGCA

                           *       
         29 GCAGCCAG-TGCCGGCGCCGG-A
          1 GCAG-CAGCTGCCGGAGCCGGCA

                       *          
         50 GCAGCAGCTGCGGGAGCCGGC-
          1 GCAGCAGCTGCCGGAGCCGGCA

                             
         71 GCAGCAGCTGCCGGAGC
          1 GCAGCAGCTGCCGGAGC

         88 AGCGGCGCCT


Statistics
Matches: 49,  Mismatches: 6, Indels: 8
        0.78            0.10        0.13

Matches are distributed among these distances:
  20    3  0.06
  21   41  0.84
  22    5  0.10

ACGTcount: A:0.15, C:0.35, G:0.46, T:0.04


Consensus pattern (22 bp):   
GCAGCAGCTGCCGGAGCCGGCA
Done.