Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000532.1 Corchorus olitorius cultivar O-4 contig00532, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 704

Length: 1174
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41


Found at i:833 original size:23 final size:23

Alignment explanation


    Indices: 807--850  Score: 54
    Period size: 23  Copynumber: 1.9  Consensus size: 23

        797 TTAAATCTAA

                *                   
        807 TATCCTTATACCT-ATTTTATTTT
          1 TATCATTATA-CTAATTTTATTTT

                   *             
        830 TATCATTCTACTAATTTTATT
          1 TATCATTATACTAATTTTATT

        851 AAAAAACTTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  22    2  0.11
  23   16  0.89

ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59


Consensus pattern (23 bp):   
TATCATTATACTAATTTTATTTT
Done.