Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005335.1 Corchorus olitorius cultivar O-4 contig05358, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1108
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32


Found at i:330 original size:17 final size:17

Alignment explanation


    Indices: 308--341  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        298 AATCTACAAG

                             
        308 GTCTAAACTCAACTCTT
          1 GTCTAAACTCAACTCTT

                             
        325 GTCTAAACTCAACTCTT
          1 GTCTAAACTCAACTCTT

        342 TCAACTTTTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.29, C:0.29, G:0.06, T:0.35


Consensus pattern (17 bp):   
GTCTAAACTCAACTCTT
Done.