Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005362.1 Corchorus olitorius cultivar O-4 contig05386, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1328
ACGTcount: A:0.13, C:0.33, G:0.36, T:0.18


Found at i:382 original size:18 final size:19

Alignment explanation


    Indices: 359--401  Score: 56
    Period size: 18  Copynumber: 2.4  Consensus size: 19

        349 GGAACGAAGA

                               
        359 GCTGCCGCCG-CCCGAGCC
          1 GCTGCCGCCGACCCGAGCC

                                
        377 GCTG-C-CCGAACCCGAGCC
          1 GCTGCCGCCG-ACCCGAGCC

                   
        395 GCTGCCG
          1 GCTGCCG

        402 TAGTTGGTGT


Statistics
Matches: 21,  Mismatches: 0, Indels: 6
        0.78            0.00        0.22

Matches are distributed among these distances:
  16    3  0.14
  17    1  0.05
  18   16  0.76
  19    1  0.05

ACGTcount: A:0.09, C:0.51, G:0.33, T:0.07


Consensus pattern (19 bp):   
GCTGCCGCCGACCCGAGCC
Done.