Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000537.1 Corchorus olitorius cultivar O-4 contig00537, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1871
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.25


Found at i:1093 original size:36 final size:37

Alignment explanation


    Indices: 1052--1130  Score: 99
    Period size: 36  Copynumber: 2.2  Consensus size: 37

       1042 TAATAATAAT

                               *          *       
       1052 AAAAAAC-TGGACCTAAAATAGAAAGAGGTTA-AAAAA
          1 AAAAAACTTGG-CCTAAAACAGAAAGAGGTCAGAAAAA

                                  *          *   
       1088 AAAAAACTTGGCCTAAAACAGAGAGAGGTCAGAGAAA
          1 AAAAAACTTGGCCTAAAACAGAAAGAGGTCAGAAAAA

                  
       1125 AAAAAA
          1 AAAAAA

       1131 GAAAAAAGAA


Statistics
Matches: 37,  Mismatches: 4, Indels: 3
        0.84            0.09        0.07

Matches are distributed among these distances:
  36   24  0.65
  37   13  0.35

ACGTcount: A:0.59, C:0.10, G:0.19, T:0.11


Consensus pattern (37 bp):   
AAAAAACTTGGCCTAAAACAGAAAGAGGTCAGAAAAA
Done.