Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005374.1 Corchorus olitorius cultivar O-4 contig05398, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1085
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28


Found at i:220 original size:22 final size:22

Alignment explanation


    Indices: 192--236  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        182 TTTCGAGAAA

                                  
        192 GTGAGGCATACTACTTAATGGC
          1 GTGAGGCATACTACTTAATGGC

                                  
        214 GTGAGGCATACTACTTAATGGC
          1 GTGAGGCATACTACTTAATGGC

             
        236 G
          1 G

        237 AACGAACGGG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27


Consensus pattern (22 bp):   
GTGAGGCATACTACTTAATGGC
Done.