Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005375.1 Corchorus olitorius cultivar O-4 contig05399, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1176
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:149 original size:22 final size:22

Alignment explanation


    Indices: 121--163  Score: 70
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        111 TAAGTTTAAC

                                   
        121 TGTAGCAAG-TTTGTAGTAAGAT
          1 TGTAGC-AGTTTTGTAGTAAGAT

                                 
        143 TGTAGCAGTTTTGTAGTAAGA
          1 TGTAGCAGTTTTGTAGTAAGA

        164 ATGTGAGGCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  21    2  0.10
  22   18  0.90

ACGTcount: A:0.30, C:0.05, G:0.28, T:0.37


Consensus pattern (22 bp):   
TGTAGCAGTTTTGTAGTAAGAT
Done.