Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005388.1 Corchorus olitorius cultivar O-4 contig05412, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1045
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23


Found at i:179 original size:13 final size:14

Alignment explanation


    Indices: 151--179  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        141 GGGAATGATG

                          
        151 AATAGCTTTCCTTC
          1 AATAGCTTTCCTTC

                          
        165 AATAGCTTT-CTTC
          1 AATAGCTTTCCTTC

              
        178 AA
          1 AA

        180 GAATCAATTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    6  0.40
  14    9  0.60

ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41


Consensus pattern (14 bp):   
AATAGCTTTCCTTC
Done.