Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005407.1 Corchorus olitorius cultivar O-4 contig05431, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 736

Length: 1227
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.18


Found at i:581 original size:27 final size:27

Alignment explanation


    Indices: 549--614  Score: 87
    Period size: 27  Copynumber: 2.4  Consensus size: 27

        539 AACGCTGCAA

                          *  *         
        549 CATCAACAACAGGTTCAGCAATACCAG
          1 CATCAACAACAGGTGCAACAATACCAG

                                  *    
        576 CATCAACAACAGGTGCAACAATTCCAG
          1 CATCAACAACAGGTGCAACAATACCAG

             *   *      
        603 CGTCAGCAACAG
          1 CATCAACAACAG

        615 CAGGTGCAGC


Statistics
Matches: 34,  Mismatches: 5, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  27   34  1.00

ACGTcount: A:0.39, C:0.30, G:0.17, T:0.14


Consensus pattern (27 bp):   
CATCAACAACAGGTGCAACAATACCAG
Done.