Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005417.1 Corchorus olitorius cultivar O-4 contig05441, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1007
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.26


Found at i:816 original size:16 final size:17

Alignment explanation


    Indices: 795--841  Score: 69
    Period size: 16  Copynumber: 2.8  Consensus size: 17

        785 CACCACACCG

                  *          
        795 GATTTAGGAAAAAAAC-
          1 GATTTAAGAAAAAAACA

                             
        811 GATTTAAGAAAAAAACA
          1 GATTTAAGAAAAAAACA

                          
        828 GATTTAAAGAAAAA
          1 GATTT-AAGAAAAA

        842 CTCCAATTTT


Statistics
Matches: 28,  Mismatches: 1, Indels: 2
        0.90            0.03        0.06

Matches are distributed among these distances:
  16   15  0.54
  17    5  0.18
  18    8  0.29

ACGTcount: A:0.62, C:0.04, G:0.15, T:0.19


Consensus pattern (17 bp):   
GATTTAAGAAAAAAACA

Done.