Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005427.1 Corchorus olitorius cultivar O-4 contig05451, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 844

Length: 1408
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:369 original size:16 final size:16

Alignment explanation


    Indices: 348--382  Score: 61
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        338 ACGATTACCG

                            
        348 AACAACTAAACAACCA
          1 AACAACTAAACAACCA

                     *      
        364 AACAACTAACCAACCA
          1 AACAACTAAACAACCA

               
        380 AAC
          1 AAC

        383 CTAGTAGGCC


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.60, C:0.34, G:0.00, T:0.06


Consensus pattern (16 bp):   
AACAACTAAACAACCA
Done.