Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005428.1 Corchorus olitorius cultivar O-4 contig05452, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 652

Length: 1087
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33


Found at i:800 original size:21 final size:21

Alignment explanation


    Indices: 762--803  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        752 AGCTGTGCAA

                       ***       
        762 AATAACCAGTTTTTATAGCTT
          1 AATAACCAGTTACCATAGCTT

                                 
        783 AATAACCAGTTACCATAGCTT
          1 AATAACCAGTTACCATAGCTT

        804 TAAGATCATC


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36


Consensus pattern (21 bp):   
AATAACCAGTTACCATAGCTT
Done.