Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005439.1 Corchorus olitorius cultivar O-4 contig05463, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1092
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.42


Found at i:924 original size:73 final size:73

Alignment explanation


    Indices: 827--971  Score: 218
    Period size: 73  Copynumber: 2.0  Consensus size: 73

        817 TATGTTTTCC

                     *    *    *        *   *           *           *        
        827 GATTGTACCTTTTTTTTTCTAATATATTTCTAGATTGCCATTATTAAATAATATTTTAATTATTC
          1 GATTGTACCCTTTTCTTTCAAATATATTGCTAAATTGCCATTATCAAATAATATTTAAATTATTC

                    
        892 AATTATTT
         66 AATTATTT

                                                                             
        900 GATTGTACCCTTTTCTTTCAAATATATTGCTAAATTGCCATTATCAAATAATATTTAAATTATTC
          1 GATTGTACCCTTTTCTTTCAAATATATTGCTAAATTGCCATTATCAAATAATATTTAAATTATTC

            *      
        965 TATTATT
         66 AATTATT

        972 AATTACTAGA


Statistics
Matches: 64,  Mismatches: 8, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  73   64  1.00

ACGTcount: A:0.32, C:0.12, G:0.06, T:0.51


Consensus pattern (73 bp):   
GATTGTACCCTTTTCTTTCAAATATATTGCTAAATTGCCATTATCAAATAATATTTAAATTATTC
AATTATTT
Done.