Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005444.1 Corchorus olitorius cultivar O-4 contig05468, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 834

Length: 1391
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27


Found at i:1347 original size:21 final size:21

Alignment explanation


    Indices: 1322--1366  Score: 90
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1312 ACCTTCTGAG

                                 
       1322 CCTTTACATAACCTACTTCGT
          1 CCTTTACATAACCTACTTCGT

                                 
       1343 CCTTTACATAACCTACTTCGT
          1 CCTTTACATAACCTACTTCGT

               
       1364 CCT
          1 CCT

       1367 AGGCGGTGGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.22, C:0.36, G:0.04, T:0.38


Consensus pattern (21 bp):   
CCTTTACATAACCTACTTCGT
Done.