Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005462.1 Corchorus olitorius cultivar O-4 contig05486, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1451
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30


Found at i:590 original size:18 final size:18

Alignment explanation


    Indices: 567--602  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        557 TTTGCCTAGA

                              
        567 GTATGCTTTGAATTTGAT
          1 GTATGCTTTGAATTTGAT

                              
        585 GTATGCTTTGAATTTGAT
          1 GTATGCTTTGAATTTGAT

        603 TCTGATATTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.22, C:0.06, G:0.22, T:0.50


Consensus pattern (18 bp):   
GTATGCTTTGAATTTGAT

Found at i:782 original size:27 final size:28

Alignment explanation


    Indices: 738--792  Score: 103
    Period size: 27  Copynumber: 2.0  Consensus size: 28

        728 AGAAGGCAGC

                                        
        738 AGACTAGTTTTGCTACTCAGTCTAGAAT
          1 AGACTAGTTTTGCTACTCAGTCTAGAAT

                                        
        766 AGACTAG-TTTGCTACTCAGTCTAGAAT
          1 AGACTAGTTTTGCTACTCAGTCTAGAAT

        793 GGGGGAAGAG


Statistics
Matches: 27,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  27   20  0.74
  28    7  0.26

ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35


Consensus pattern (28 bp):   
AGACTAGTTTTGCTACTCAGTCTAGAAT
Done.