Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005464.1 Corchorus olitorius cultivar O-4 contig05488, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1046
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.19


Found at i:374 original size:18 final size:17

Alignment explanation


    Indices: 326--374  Score: 62
    Period size: 18  Copynumber: 2.7  Consensus size: 17

        316 GCCGCCGATG

                              
        326 CTGCTGGCGTTGCTGACT
          1 CTGCTGGCG-TGCTGACT

                *             
        344 CTGCCGGCGGTGCTGACT
          1 CTGCTGGC-GTGCTGACT

                         
        362 CTGCTGGCTGTGC
          1 CTGCTGGC-GTGC

        375 GGGTGCTGTA


Statistics
Matches: 27,  Mismatches: 3, Indels: 2
        0.84            0.09        0.06

Matches are distributed among these distances:
  18   26  0.96
  19    1  0.04

ACGTcount: A:0.04, C:0.31, G:0.37, T:0.29


Consensus pattern (17 bp):   
CTGCTGGCGTGCTGACT
Done.