Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005476.1 Corchorus olitorius cultivar O-4 contig05500, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 877

Length: 1462
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27


Found at i:1096 original size:8 final size:8

Alignment explanation


    Indices: 1085--1157  Score: 146
    Period size: 8  Copynumber: 9.1  Consensus size: 8

       1075 ATCATTTTGT

                    
       1085 CATCCAAG
          1 CATCCAAG

                    
       1093 CATCCAAG
          1 CATCCAAG

                    
       1101 CATCCAAG
          1 CATCCAAG

                    
       1109 CATCCAAG
          1 CATCCAAG

                    
       1117 CATCCAAG
          1 CATCCAAG

                    
       1125 CATCCAAG
          1 CATCCAAG

                    
       1133 CATCCAAG
          1 CATCCAAG

                    
       1141 CATCCAAG
          1 CATCCAAG

                    
       1149 CATCCAAG
          1 CATCCAAG

             
       1157 C
          1 C

       1158 TCGCAAAGCT


Statistics
Matches: 65,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   65  1.00

ACGTcount: A:0.37, C:0.38, G:0.12, T:0.12


Consensus pattern (8 bp):   
CATCCAAG

Done.