Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005487.1 Corchorus olitorius cultivar O-4 contig05511, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36


Found at i:941 original size:49 final size:50

Alignment explanation


    Indices: 888--986  Score: 191
    Period size: 49  Copynumber: 2.0  Consensus size: 50

        878 GGAATAGGTT

                                                              
        888 TACATAGTTATGGTTCATTTACATTAACATCTAATTGAATTGAAT-AAAA
          1 TACATAGTTATGGTTCATTTACATTAACATCTAATTGAATTGAATCAAAA

                                                              
        937 TACATAGTTATGGTTCATTTACATTAACATCTAATTGAATTGAATCAAAA
          1 TACATAGTTATGGTTCATTTACATTAACATCTAATTGAATTGAATCAAAA

        987 AAAAGGCTAA


Statistics
Matches: 49,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  49   45  0.92
  50    4  0.08

ACGTcount: A:0.40, C:0.11, G:0.10, T:0.38


Consensus pattern (50 bp):   
TACATAGTTATGGTTCATTTACATTAACATCTAATTGAATTGAATCAAAA
Done.