Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005491.1 Corchorus olitorius cultivar O-4 contig05515, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1151
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29


Found at i:1064 original size:8 final size:8

Alignment explanation


    Indices: 1051--1143  Score: 186
    Period size: 8  Copynumber: 11.6  Consensus size: 8

       1041 GCACCCTCTG

                    
       1051 CCACAGAA
          1 CCACAGAA

                    
       1059 CCACAGAA
          1 CCACAGAA

                    
       1067 CCACAGAA
          1 CCACAGAA

                    
       1075 CCACAGAA
          1 CCACAGAA

                    
       1083 CCACAGAA
          1 CCACAGAA

                    
       1091 CCACAGAA
          1 CCACAGAA

                    
       1099 CCACAGAA
          1 CCACAGAA

                    
       1107 CCACAGAA
          1 CCACAGAA

                    
       1115 CCACAGAA
          1 CCACAGAA

                    
       1123 CCACAGAA
          1 CCACAGAA

                    
       1131 CCACAGAA
          1 CCACAGAA

                 
       1139 CCACA
          1 CCACA

       1144 CATTTGCA


Statistics
Matches: 85,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   85  1.00

ACGTcount: A:0.49, C:0.39, G:0.12, T:0.00


Consensus pattern (8 bp):   
CCACAGAA

Done.