Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005495.1 Corchorus olitorius cultivar O-4 contig05519, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1105
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38


Found at i:921 original size:22 final size:22

Alignment explanation


    Indices: 879--920  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        869 ATCTATTTAA

                                  
        879 TATTTCTATTTCTTTATTTTTC
          1 TATTTCTATTTCTTTATTTTTC

                                 
        901 TATTTCT-TTTCTTTATTTTT
          1 TATTTCTATTTCTTTATTTTT

        921 TTCTGTCGAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  21   13  0.65
  22    7  0.35

ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76


Consensus pattern (22 bp):   
TATTTCTATTTCTTTATTTTTC
Done.