Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000055.1 Corchorus olitorius cultivar O-4 contig00055, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 740

Length: 1234
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.27


Found at i:670 original size:15 final size:16

Alignment explanation


    Indices: 646--684  Score: 53
    Period size: 15  Copynumber: 2.5  Consensus size: 16

        636 AGAGGTCGAA

                 *          
        646 AGAAAGCAATTAAAC-
          1 AGAAAACAATTAAACT

                        *   
        661 AGAAAACAATTATACT
          1 AGAAAACAATTAAACT

                    
        677 AGAAAACA
          1 AGAAAACA

        685 GAACAAAGTA


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   13  0.62
  16    8  0.38

ACGTcount: A:0.62, C:0.13, G:0.10, T:0.15


Consensus pattern (16 bp):   
AGAAAACAATTAAACT

Done.