Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005502.1 Corchorus olitorius cultivar O-4 contig05526, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 676

Length: 1127
ACGTcount: A:0.17, C:0.30, G:0.35, T:0.17


Found at i:558 original size:3 final size:3

Alignment explanation


    Indices: 550--615  Score: 114
    Period size: 3  Copynumber: 22.0  Consensus size: 3

        540 ATTCCACGAC

                                                    *           *          
        550 CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG GGG CGG CGG GGG CGG CGG
          1 CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG

                                   
        598 CGG CGG CGG CGG CGG CGG
          1 CGG CGG CGG CGG CGG CGG

        616 AGCTGCCGGT


Statistics
Matches: 59,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   59  1.00

ACGTcount: A:0.00, C:0.30, G:0.70, T:0.00


Consensus pattern (3 bp):   
CGG

Done.