Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005504.1 Corchorus olitorius cultivar O-4 contig05528, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 708

Length: 1181
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23


Found at i:919 original size:23 final size:23

Alignment explanation


    Indices: 889--934  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        879 CCTCCTCTCT

                                   
        889 TGAATGAACAAATGTCATCAAGA
          1 TGAATGAACAAATGTCATCAAGA

                                   
        912 TGAATGAACAAATGTCATCAAGA
          1 TGAATGAACAAATGTCATCAAGA

        935 ATTGGAAAGC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.48, C:0.13, G:0.17, T:0.22


Consensus pattern (23 bp):   
TGAATGAACAAATGTCATCAAGA
Done.