Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000551.1 Corchorus olitorius cultivar O-4 contig00551, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 795

Length: 1326
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.34


Found at i:746 original size:22 final size:21

Alignment explanation


    Indices: 713--756  Score: 70
    Period size: 22  Copynumber: 2.0  Consensus size: 21

        703 ATAACTTCAC

                        *        
        713 TTATGAAATTAATATATTAAT
          1 TTATGAAATTAAAATATTAAT

                                  
        734 TTATGTAAATTAAAATATTAAT
          1 TTATG-AAATTAAAATATTAAT

             
        756 T
          1 T

        757 ATTCCAATTG


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  21    5  0.24
  22   16  0.76

ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48


Consensus pattern (21 bp):   
TTATGAAATTAAAATATTAAT

Found at i:1003 original size:21 final size:22

Alignment explanation


    Indices: 966--1024  Score: 68
    Period size: 22  Copynumber: 2.7  Consensus size: 22

        956 GGTTTGGTAG

                         *         
        966 AATTAATA-ACTTCATTTAT-AA
          1 AATTAATATA-TTAATTTATCAA

                                * 
        987 AATTAATATATTAATTTATCTA
          1 AATTAATATATTAATTTATCAA

                  *         
       1009 AATTAAAATATTAATT
          1 AATTAATATATTAATT

       1025 ATTCCTATTG


Statistics
Matches: 33,  Mismatches: 3, Indels: 3
        0.85            0.08        0.08

Matches are distributed among these distances:
  21   16  0.48
  22   17  0.52

ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46


Consensus pattern (22 bp):   
AATTAATATATTAATTTATCAA
Done.