Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005514.1 Corchorus olitorius cultivar O-4 contig05538, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 674

Length: 1124
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.34


Found at i:1036 original size:22 final size:22

Alignment explanation


    Indices: 1011--1056  Score: 92
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       1001 AAATGACCAC

                                  
       1011 AACAAAATAAATACTTATACTT
          1 AACAAAATAAATACTTATACTT

                                  
       1033 AACAAAATAAATACTTATACTT
          1 AACAAAATAAATACTTATACTT

              
       1055 AA
          1 AA

       1057 AAGGACCAAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30


Consensus pattern (22 bp):   
AACAAAATAAATACTTATACTT
Done.