Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005517.1 Corchorus olitorius cultivar O-4 contig05541, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1107
ACGTcount: A:0.14, C:0.31, G:0.34, T:0.21


Found at i:125 original size:24 final size:24

Alignment explanation


    Indices: 85--130  Score: 58
    Period size: 24  Copynumber: 1.9  Consensus size: 24

         75 ACGTTGGCTT

                        *           
         85 CTTCGGCCGCCTTGCGTGCGGCGG
          1 CTTCGGCCGCCTGGCGTGCGGCGG

                              *    
        109 CTTCGG-CGCGCTGGCGTTCGGC
          1 CTTCGGCCGC-CTGGCGTGCGGC

        131 TTCACGTGCC


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  23    3  0.16
  24   16  0.84

ACGTcount: A:0.00, C:0.37, G:0.41, T:0.22


Consensus pattern (24 bp):   
CTTCGGCCGCCTGGCGTGCGGCGG
Done.