Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005550.1 Corchorus olitorius cultivar O-4 contig05574, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1012
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27


Found at i:639 original size:24 final size:24

Alignment explanation


    Indices: 612--661  Score: 91
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        602 CGGAGGTACT

                         *          
        612 GGAAGATAGAATCTCTTCGGTGTG
          1 GGAAGATAGAATCCCTTCGGTGTG

                                    
        636 GGAAGATAGAATCCCTTCGGTGTG
          1 GGAAGATAGAATCCCTTCGGTGTG

              
        660 GG
          1 GG

        662 TGCTTTGTCT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.24, C:0.14, G:0.36, T:0.26


Consensus pattern (24 bp):   
GGAAGATAGAATCCCTTCGGTGTG
Done.