Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005552.1 Corchorus olitorius cultivar O-4 contig05576, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 631

Length: 1052
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30


Found at i:570 original size:26 final size:26

Alignment explanation


    Indices: 538--591  Score: 108
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        528 CTCAGCTTTA

                                      
        538 ATGATTGATTAGCTCGGCCCTTCCTG
          1 ATGATTGATTAGCTCGGCCCTTCCTG

                                      
        564 ATGATTGATTAGCTCGGCCCTTCCTG
          1 ATGATTGATTAGCTCGGCCCTTCCTG

              
        590 AT
          1 AT

        592 CCCGTTTAGG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   28  1.00

ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35


Consensus pattern (26 bp):   
ATGATTGATTAGCTCGGCCCTTCCTG

Found at i:862 original size:18 final size:18

Alignment explanation


    Indices: 839--877  Score: 78
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        829 CCGACCCGCC

                              
        839 CTTTAGTTTCTTCTTTCT
          1 CTTTAGTTTCTTCTTTCT

                              
        857 CTTTAGTTTCTTCTTTCT
          1 CTTTAGTTTCTTCTTTCT

               
        875 CTT
          1 CTT

        878 GTGTATTCCG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.05, C:0.23, G:0.05, T:0.67


Consensus pattern (18 bp):   
CTTTAGTTTCTTCTTTCT
Done.